Brain Architecture Project Reference Atlas Framework for the Mouse Head and Brain

Available Data Sets

• Reference Atlas Space based on invivo MRI/CT
  • 3D Nissl volume (see also “transverse brain” below) Download ZIP
  • In vivo T2 MRI average Download ZIP
  • Ex vivo T2 MRI average Download ZIP
  • In vivo dMRI average Download ZIP
  • Ex vivo dMRI average Download ZIP
  • “Bubble corrected” Allen Atlas Annotations
• Histology data for mouse head <!–
  • Registered Space
    • Head sectioned in coronal plane Download ZIP
    • Head sectioned in transverse plane Download ZIP
    • Head sectioned in sagittal plane Download ZIP –>
    • 0.46um 2D registered space
      • Head sectioned in sagittal plane 2D high resolution viewer - Head sectioned in transverse plane 2D high resolution viewer
  • 20um 3D Atlas Space
    • Head sectioned in sagittal plane Download ZIP
    • Head sectioned in transverse plane Download ZIP
• Histology Data for mouse brain <!–
  • Registered Space
    • Brain sectioned in coronal plane Download ZIP
    • Brain sectioned in transverse plane Download ZIP
    • Brain sectioned in sagittal plane Download ZIP –>
    • 0.46um 2D registered space
      • Brain sectioned in the sagittal plane 2D high resolution viewer
      • Brain sectioned in the transverse plane 2D high resolution viewer
      • Brain sectioned in the coronal plane 2D high resolution viewer
  • 20um 3D Atlas Space - Brain sectioned in sagittal plane Download ZIP, 3D viewer
    • Brain sectioned in transverse plane Download ZIP, 3D viewer
    • Brain sectioned in coronal plane Download ZIP, 3D viewer

      Access

      All datasets are available under GNU GPL v3 license.